27 August 2026

Cholera

Last Updated: 21 October 2025

Introduction

Cholera is an acute diarrhoeal infection caused by ingestion of food or water contaminated with the bacterium Vibrio cholerae. Cholera remains a global threat to public health and an indicator of inequity and lack of social development. The World Health Organization (WHO) estimates that annually there are 1.4 to 4.0 million cases and 21,000 to 143,000 deaths worldwide from cholera (Ali et al., 2015; Clemens et al., 2017).

History

During the 19th century, cholera spread across the world from its original reservoir in the Ganges delta in India. Six subsequent pandemics killed millions of people across all continents. The current (seventh) pandemic started in South Asia in 1961, reached Africa in 1971 and the Americas in 1991. Cholera is now endemic in Latin and Central America and sub-Saharan Africa (Kanungo et al., 2022).

Discovery of the Bacterium

Between 1849 and 1854, the London physician John Snow put forth the idea that cholera was an infectious disease transmitted between individuals, with feces containing the infectious agent. He proposed that this agent could contaminate drinking water sources, leading to the spread of cholera. Independently, in 1854, Filippo Pacini in Italy made the initial microscopic observation of comma-shaped bacteria in cholera samples. Later, in 1884, Robert Koch succeeded in isolating Vibrio cholerae in pure culture during his research that began in Egypt and continued in Calcutta (now Kolkata), India (Finkelstein, 1996).

Causative Agent

Cholera is caused by ingestion of food or water contaminated with the bacterium Vibrio cholerae. V. cholerae is a gram-negative, comma-shaped bacterium that causes acute, large-volume, watery diarrhea that can result in rapid dehydration and hypovolemia. Vibrio cholerae is categorized into over 200 serogroups based on the O antigen present in its lipopolysaccharide. Among these, only the O1 and O139 serogroups are responsible for causing epidemic cholera (Finkelstein, 1996; Mohammadi Barzelighi, Bakhshi, & Boustanshenas, 2016).

V. cholerae O1 has caused all recent outbreaks. Furthermore, O1 strains are divided into three serotypes—Ogawa, Inaba, and Hikojima—classified according to the methylation status of the terminal perosamine of the LPS. Serogroup O1 is also classified into Classical and El Tor biotypes, based on phenotypic and genetic markers (Mohammadi Barzelighi et al., 2016; Clemens et al., 2017). V. cholerae O139, first identified in Bangladesh in 1992, caused outbreaks in the past but has recently only been identified in sporadic cases and has never been detected outside Asia. There is no difference in illness severity caused by the two serogroups (Morris, 2003).

Pathogenesis

Cholera transmission occurs via the fecal-oral route, with V. cholerae surviving stomach acidity to colonize the small intestine. The bacterium produces cholera enterotoxin (CT), which binds to intestinal epithelial cells and activates adenylate cyclase, elevating cyclic adenosine monophosphate (cAMP) levels. This biochemical cascade causes massive secretion of electrolytes and water into the intestinal lumen, resulting in profuse watery diarrhea (Ali et al., 2015; Clemens et al., 2017). Additionally, the toxin-coregulated pilus (TCP) facilitates bacterial adherence and colonization, an essential step for infection establishment (Clemens et al., 2017).

V. cholerae can persist in environmental reservoirs, including brackish water and estuaries, often associated with plankton and shellfish. Environmental factors such as temperature and rainfall influence the bacterium’s survival and transmission dynamics, contributing to seasonal cholera outbreaks (Morris, 2003).

Symptoms

Cholera is a highly virulent disease that causes severe acute watery diarrhea, often described as “rice water stools.” Symptoms typically appear 12 hours to 5 days after ingesting contaminated food or water (Azman, Rudolph, Cummings, & Lessler, 2013). Cholera affects individuals of all ages and can be fatal within hours if untreated. Most infected persons are asymptomatic, though they shed bacteria in feces for 1 to 10 days, contributing to transmission. Among symptomatic individuals, the majority experience mild to moderate illness, while a minority develop severe dehydration that can lead to hypovolemic shock and death without prompt treatment (Kanungo et al., 2022).

Epidemiology and Global Burden

Cholera continues to pose a major public health threat, particularly in low- and middle-income countries. Recent data indicate that nearly three-quarters of cholera outbreaks occur in Africa, with the remainder primarily affecting Asia. Poverty, inadequate water, sanitation, and hygiene (WASH) infrastructure, seasonal rainfall, population density, and population movement are key factors facilitating cholera transmission (Ali et al., 2015; WHO, 2024). In 2024, the World Health Organization reported over 733,000 cases of cholera and acute watery diarrhea across 33 countries, with more than 5,000 deaths (WHO, 2024). Conflict and displacement further exacerbate outbreak risks by disrupting water and sanitation systems, as recently observed in Sudan. Additionally, climate extremes such as floods and droughts have increased cholera transmission by compromising water quality (Azman et al., 2013; Morris, 2003).

Diagnosis

Timely and accurate diagnosis is critical for effective cholera control. While clinical diagnosis based on symptoms is often used in resource-limited settings, laboratory confirmation through stool culture or rapid diagnostic tests (RDTs) remains the standard. Recent reviews indicate that although rapid dipstick tests provide practical benefits in outbreak settings, their sensitivity and specificity can vary depending on sample preparation and field conditions (Morris, 2003; Ali et al., 2015). Despite these limitations, RDTs enable prompt public health responses, such as targeted vaccination campaigns and water sanitation interventions (Mayo Clinic, 2023).

Immune Response and Protection

Natural infection with Vibrio cholerae typically induces strong immunity, particularly after symptomatic disease. Observational and challenge studies suggest that protection can last for at least three years, although antibody levels often decline within one year post-infection (Finkelstein, 1996; Clemens et al., 2017). The immune response involves both mucosal and systemic components, including memory B cells and secretory IgA, which contribute to long-lasting protection. Older individuals tend to mount more robust immune responses, correlating with lower risk of reinfection (Mohammadi Barzelighi et al., 2016). Oral cholera vaccines (OCVs) mimic natural infection by inducing mucosal and systemic immunity, including antigen-specific IgA and memory B cells. Booster doses enhance immunity and prolong protection (Kanungo et al., 2022).

Treatment / Management

Oral rehydration solutions (ORS) remain the cornerstone of cholera treatment, with aggressive volume replacement tailored to the severity of dehydration. Initial volume deficits should be replaced within the first 4 to 6 hours, with a total of approximately 350 mL/kg administered within the first 24 hours. Close monitoring of ongoing fluid losses is essential to reduce mortality. Antibiotics such as tetracyclines and macrolides can shorten the duration and severity of symptoms and are used as adjunct therapy (Finkelstein, 1996).

Prevention

Adequate water, sanitation, and hygiene infrastructure constitute the primary preventive measures against cholera. Oral cholera vaccines (OCVs) offer safe, effective, and affordable outbreak control in high-risk endemic areas. Currently, three WHO-prequalified OCVs—Dukoral®, Euvichol-Plus®, and Euvichol-S®—are available, with two doses required for complete adult protection. Single doses of Euvichol-Plus® or Euvichol-S® provide effective short-term immunity. Euvichol-S®, a simplified variant of Euvichol-Plus®, received WHO prequalification in 2024. The Shancol vaccine is no longer produced (WHO, 2024).

References

Ali, M., Nelson, A. R., Lopez, A. L., & Sack, D. (2015). Updated global burden of cholera in endemic countries. PLoS Neglected Tropical Diseases, 9(6), e0003832. https://doi.org/10.1371/journal.pntd.0003832
Azman, A. S., Rudolph, K. E., Cummings, D. A., & Lessler, J. (2013). The incubation period of cholera: a systematic review. Journal of Infection, 66(5), 432-438. https://doi.org/10.1016/j.jinf.2012.11.013
Clemens, J. D., Nair, G. B., Ahmed, T., Qadri, F., & Holmgren, J. (2017). Cholera. The Lancet, 390(10101), 1539-1549. https://doi.org/10.1016/S0140-6736(17)30559-7
Finkelstein, R. A. (1996). Cholera, Vibrio cholerae O1 and O139, and other pathogenic vibrios. In S. Baron (Ed.), Medical Microbiology (4th ed., Chapter 24). University of Texas Medical Branch. https://www.ncbi.nlm.nih.gov/books/NBK8407/
Kanungo, S., Azman, A. S., Ramamurthy, T., Deen, J., & Dutta, S. (2022). Cholera. The Lancet, 399(10333), 1429-1440. https://doi.org/10.1016/S0140-6736(12)60436-X
Mohammadi Barzelighi, H., Bakhshi, B., & Boustanshenas, M. (2016). Genetic determinants differences between Vibrio cholerae biotypes. Infectious Epidemiology & Medicine, 2(2), 26–30. https://doi.org/10.18869/modares.iem.2.2.26
Morris, J. G. Jr. (2003). Cholera and other types of vibriosis: a story of human pandemics and oysters on the half shell. Clinical Infectious Diseases, 37(2), 272-280. https://doi.org/10.1086/375600
World Health Organization. (2024). Cholera. https://www.who.int/news-room/fact-sheets/detail/cholera

16 July 2026

TCBS Agar

TCBS Agar Interactive
🧫 TCBS Agar Interactive Microbiology Learning System

Intended Use

Selective and differential medium for isolation of Vibrio species from stool, seafood and environmental samples.

Principle

  • High pH suppresses many intestinal bacteria.
  • Bile salts, citrate and sodium thiosulfate increase selectivity.
  • Sucrose differentiates fermenters.
  • Bromothymol blue and thymol blue indicate pH changes.
  • Ferric citrate detects H₂S (rare in Vibrio).

Composition

ComponentFunction
Peptones/Yeast extractNutrients
SucroseDifferential carbohydrate
Sodium citrateSelectivity
Ox bileInhibits Gram positives
Sodium thiosulfateSulfur source
Ferric citrateH₂S indicator
Bromothymol blue & Thymol bluepH indicators
AgarSolidifying agent

Blood Agar (BA)

Blood Agar Interactive
🩸 Blood Agar Interactive Microbiology Learning System

Intended Use

Blood Agar (BA) is an enriched, differential medium used for isolation of many clinically important bacteria and demonstration of hemolysis.

Principle

  • 5% sheep blood enriches growth.
  • Hemolysins produce characteristic hemolysis.

Composition

ComponentRole
Tryptic Soy/Columbia BaseNutrients
5% Defibrinated Sheep BloodGrowth factors & hemolysis
AgarSolidifying agent

Chocolate Agar

Chocolate Agar Interactive Learning App
🩸 Chocolate Agar Interactive Microbiology Learning System

Intended Use

Chocolate Agar is an enriched, non-selective medium for cultivation of fastidious organisms including Haemophilus and Neisseria.

Principle

  • Heating blood lyses RBCs.
  • Lysis releases X factor (hemin) and V factor (NAD).
  • Supports fastidious organisms.

Composition

ComponentRole
PeptonesNutrients
Sodium chlorideOsmotic balance
AgarSolidifying agent
Defibrinated bloodSource of X & V factors after heating
Enrichment supplement (e.g. IsoVitaleX)Growth factors

Blood Agar vs Chocolate Agar

Blood AgarChocolate Agar
Intact RBCsLysed RBCs
Shows hemolysisNo hemolysis visible
Limited X/V availabilityX and V factors available

Xylose Lysine Deoxycholate (XLD) Agar

XLD Interactive
🧫 Xylose Lysine Deoxycholate (XLD) Agar Interactive Learning System

Intended Use

XLD agar is a selective and differential medium for isolation of Salmonella and Shigella from clinical and food samples.

Principle

  • Deoxycholate inhibits Gram-positive bacteria.
  • Xylose fermentation differentiates enterics.
  • Lysine decarboxylation restores alkaline pH.
  • H₂S production forms black centers.

Composition

ComponentFunction
XyloseFermentable sugar
LysineDecarboxylation substrate
Sodium deoxycholateSelectivity
Phenol redpH indicator
Sodium thiosulfate + Ferric ammonium citrateH₂S detection

Mannitol Salt Agar (MSA)

MSA Interactive Learning App
🧫 Mannitol Salt Agar (MSA) Interactive Learning System

Intended Use

Selective and differential medium for isolation of Staphylococci.

Principle

  • 7.5% NaCl inhibits most bacteria.
  • Mannitol differentiates fermenters.
  • Phenol red turns yellow in acidic conditions.

Composition

ComponentAmount/L
Peptone10 g
Beef Extract1 g
Mannitol10 g
Sodium Chloride75 g
Phenol Red0.025 g
Agar15 g
pH7.4 ±0.2

MacConkey Agar

MacConkey Agar Interactive Learning System
🧫 MacConkey Agar Interactive Microbiology Learning System

📖 Intended Use

MacConkey Agar is a selective and differential culture medium used for isolation and differentiation of Gram-negative enteric bacilli based on lactose fermentation.

🧬 Principle

  • Peptones supply nitrogen and nutrients.
  • Lactose serves as the fermentable carbohydrate.
  • Bile salts and crystal violet inhibit Gram-positive bacteria.
  • Neutral red acts as the pH indicator.
  • Acid production from lactose fermentation changes colonies to pink or red.
  • Non-lactose fermenters remain colourless.

🧪 Composition (per litre)

ComponentAmount
Peptone17 g
Proteose Peptone3 g
Lactose10 g
Bile Salts1.5 g
Sodium Chloride5 g
Neutral Red30 mg
Crystal Violet1 mg
Agar13.5 g
Distilled Water1000 ml
Final pH7.1 ±0.2

Violet Red Bile Agar (VRBA)

Violet Red Bile Agar (VRBA)
🧪 VRBA Interactive Microbiology Learning & Lab System

📚 Intended Use

Selective and differential isolation of coliforms in water, food, milk, and dairy products. Proposed by MacConkey in 1905 for detection of lactose-fermenting gram negative bacteria.

📖 Principle

  • Gelatin peptone → nutrients
  • Yeast extract → vitamins
  • Lactose → energy source
  • Bile salts + crystal violet → inhibit Gram-positive bacteria
  • Neutral red → indicator

🧫 Reagents

ComponentAmount
Lactose10 g
Gelatin Peptone7 g
Sodium Chloride5 g
Yeast Extract3 g
Bile Salts1.5 g
Neutral Red30 mg
Crystal Violet2 mg
Agar15 g
Demineralized Water1000.0 ml
pH7.4 ± 0.2 @ 25°C (Adjusted as required to meet performance standards)

20 July 2025

CDC Chemical Disinfectants

CDC Chemical Disinfectants

CDC Chemical Disinfectants

1. Click to Explore Categories

Alcohols
  • Ethyl alcohol and isopropyl alcohol (60–90%).
  • Bactericidal, tuberculocidal, fungicidal, virucidal (no sporicidal).
  • Mechanism: protein denaturation; water aids unfolding.
  • Limitations: rapid evaporation, flammable, non‐sporocidal.
Chlorine & Compounds
  • Hypochlorites (e.g., bleach 5.25–6.15% NaOCl).
  • Broad‐spectrum; removes biofilms; low residue.
  • Active: HOCl (drops at high pH).
  • Limitations: corrosive, inactivated by organics, toxic gas risk.
Aldehydes
  • Glutaraldehyde (2%): high‐level, sporicidal with time.
  • Formaldehyde: sporicidal; limited by vapor hazard.
  • Requires ventilation and exposure monitoring.
Other Agents
  • Phenolics: intermediate, residual action; irritating.
  • QACs: good vs. vegetative bacteria, enveloped viruses.
  • Iodophors: broad‐spectrum; performance varies.
  • Peroxygens (H₂O₂, peracetic acid): sporicidal oxidizers.

2. Filterable Disinfectant Table

Name Category Spectrum
Isopropyl alcohol (70%) Alcohols Bacteria, fungi, viruses
Household bleach (5.25% NaOCl) Chlorine & Compounds Broad‐spectrum, biofilms
Glutaraldehyde (2%) Aldehydes High‐level, spores
Hydrogen peroxide (6%) Other Agents Sporicidal oxidizer

3. Quick Quiz

1. Which category uses HOCl as its active agent?

2. True or False: Alcohols are sporicidal.


Reference

Centers for Disease Control and Prevention. “Chemical Disinfectants.” Guideline for Disinfection and Sterilization in Healthcare Facilities, 2008. cdc.gov/chemical-disinfectants

04 April 2025

The Lifecycle of Retrovirus

Lifecycle of Retrovirus

Lifecycle of Retrovirus

Introduction

Retroviruses are a type of RNA virus that replicate through a DNA intermediate. They integrate their genetic material into the host genome, enabling efficient replication. This lifecycle ensures their persistence and spread in host populations.

Source: Biorender.com [6,7]

Binding

The first step in the retrovirus life cycle is the binding of the virus to the host cell. This binding is mediated by specific viral surface proteins interacting with receptors on the host cell surface.

The list of specific receptors is provided in Table 1.

Table 1. List of Specific Receptors in Retroviruses
Name of Virus Name of Receptor References
Ecotropic MLV CAT-1 (amino-acid transporter) [1,10]
HIV CD4 (T-cell surface marker) [2]
HTLV GLUT-1 (glucose transporter) [3]
Amphotropic MLV PIT-2 (phosphate transporter) [4,9]
Gibbon Ape Leukemia Virus (GaLV) PIT-1 (phosphate transporter) [5]

Fusion

After binding to the host cell, the retrovirus must enter the host cell's cytoplasm to initiate infection. This is achieved through the fusion of the viral envelope with the host cell membrane. Fusion allows the viral core containing the viral RNA and associated enzymes to enter the host cell.

Reverse Transcription

Once inside the host cell, the retroviral RNA genome is reverse transcribed into double-stranded DNA by the viral enzyme reverse transcriptase. This process involves the synthesis of a complementary DNA (cDNA) strand from the viral RNA template, followed by the synthesis of a second DNA strand to form a double stranded DNA molecule. Reverse transcription takes place within the cytoplasm of the host cell.

Integration

The newly synthesized viral DNA is transported into the nucleus of the host cell, where it integrates into the host cell's chromosomal DNA. This integration is mediated by the viral enzyme integrase, which cleaves the host cell DNA and inserts the viral DNA into the host genome. Once integrated, the viral DNA is referred to as a provirus.

Transcription

Once integrated into the host genome, the proviral DNA can be transcribed by the host cell's RNA polymerase machinery. This results in the synthesis of viral messenger RNA (mRNA) transcripts, which can then be translated into viral proteins.

Translation

The viral mRNA transcripts produced by the host cell are translated by the host cell's ribosomes into viral proteins. These viral proteins include structural proteins (such as capsid proteins) and enzymes required for viral replication.

Assembly

The newly synthesized viral proteins and viral RNA molecules are assembled into new virus particles, or virions, within the cytoplasm of the host cell. The structural proteins encapsulate the viral RNA to form the viral core, while other viral proteins contribute to the formation of the viral envelope.

Budding

Once assembled, the new virus particles bud from the host cell membrane, acquiring a lipid envelope derived from the host cell membrane embedded with viral glycoproteins. This budding process allows the newly formed virus particles to acquire their final structure and become infectious.

Release

The mature virus particles are released from the host cell, either by budding off from the cell surface or through cell lysis, where the host cell is destroyed, releasing the viral particles into the extracellular environment. These released virus particles can then infect new host cells, continuing the cycle of infection.

Conclusion

This complete cycle allows retroviruses to efficiently infect host cells, replicate their genetic material, and produce new virus particles, facilitating the spread of infection within a host organism and between individuals.

References

1. Kim JW, Closs EI, Albritton LM, Cunningham JM. Transport of cationic amino acids by the mouse ecotropic retrovirus receptor. Nature. 1991;352:725–728.

2. Maddon PJ, Dalgleish AG, McDougal JS, et al. The T4 gene encodes the AIDS virus receptor. Cell. 1986;47:333–348.

3. Manel N, Kim FJ, Kinet S, et al. The ubiquitous glucose transporter GLUT-1 is a receptor for HTLV. Cell. 2003;115:449–459.

4. Miller DG, Miller AD. A family of retroviruses that utilize related phosphate transporters for cell entry. J Virol. 1994;68:8270–8276.

5. O'Hara B, Johann SV, Klinger HP, et al. Characterization of a human gene conferring sensitivity to infection by gibbon ape leukemia virus. Cell Growth Differ. 1990;1:119–127.

6. Origin of viruses. Nature.

7. Team, B. (2020). Retrovirus Life Cycle. BioRender.

8. Van Zeijl M, Johann SV, Closs E, et al. A human amphotropic retrovirus receptor is a member of the gibbon ape leukemia virus receptor family. Proc Natl Acad Sci U S A. 1994;91:1168–1172.